Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_012985: Candidatus Liberibacter asiaticus str. psy62, complete genome

NCBI: NC_012985

Host Lineage: Liberibacter asiaticus; Liberibacter; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Candidatus Liberibacter asiaticus causes Huanglongbing (also called citrus greening disease) in citrus in Asia. This organism causes a lethal infection to the tree and is transmitted from tree to tree by the sap-sucking Asian citrus psyllid, Diaphorina citri. Once infected the citrus tree turns yellow (huanglongbing means yellow dragon disease) and the fruit remains green.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*4128041280Island text1.6731825.26439.1144Neighbours21BLASTN+1.gbk
2123500*14685123352Island text2.6060225.824952.8468Neighbours21BLASTN123500.gbk
3410307*42688216576Island text2.294927.47446.2819Neighbours21BLASTN410307.gbk
4465354*49959934246Island text2.022223.299749.4853Neighbours21BLASTN465354.gbk
5779279*80336224084Island text2.5688829.702748.5792Neighbours21BLASTN+779279.gbk
6815040*83570720668Island text1.9677122.078745.109Neighbours21BLASTN815040.gbk
7846202*86709920898Island text2.2085628.92648.1514Neighbours21BLASTN846202.gbk
81191125123049939375Island text1.9676231.975434.5508Neighbours21BLASTN+1191125.gbk