Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_012984: Lactobacillus plantarum JDM1, complete genome

NCBI: NC_012984

Host Lineage: Lactobacillus plantarum; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This strain is a Chinese commercial lactic acid bacterium with several probiotic functions. Lactobacillus plantarum are commonly isolated from plant material, and the gastrointestinal tract of animals. This organism is used in the production of fermented foods such as saurkraut, kimchi and sourdough bread. This organism is also of interest as a probiotic to maintain and regulate the human intestinal microflora.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
152000054397723978Island text1.6704829.492945.2308Neighbours21+IslandViewer 520000.gbk
21027898105330725410Island text1.5379627.836236.2955Neighbours21BLASTN+IslandViewer 1027898.gbk
31074721110359928879Island text2.722929.728121.4822Neighbours21BLASTN+IslandViewer 1074721.gbk
42681548270409922552Island text1.4781829.474744.0797Neighbours21BLASTN+2681548.gbk
52709148272785418707Island text3.1594929.003530.1194Neighbours21BLASTN+IslandViewer 2709148.gbk
63077004310149024487Island text2.6772328.210126.5014Neighbours21BLASTN+3077004.gbk