Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_012982: Hirschia baltica ATCC 49814, complete genome

NCBI: NC_012982

Host Lineage: Hirschia baltica; Hirschia; Hyphomonadaceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Marine. Strain IFAM 1418 (ATCC 49814) was isolated from the top 5cm of water in Kiel Fjord on the Baltic Sea, Germany in October 1982 and is the type strain for this species. Hirschia baltica has a biphasic life style, which consists of a motile phase of flagellated swarmer cells and a cessile phase in which a long prosthecate is produced at one end of the bacteria through which budding cells emerge. Newly budded cells in turn produce flagella and go through a motile phase and the cycle continues. These organisms can colonize the surfaces of marine environments which enables additional species to colonize at later stages.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1711122*76819257071Island text1.6725636.097928.3972Neighbours11BLASTN+IslandViewer 711122.gbk
21282856130225119396Island text1.6381427.772453.7845Neighbours581282856.gbk
31569426159350124076Island text1.4178130.41141.0769Neighbours21BLASTN1569426.gbk
41597697161833920643Island text1.5274328.696541.4393Neighbours21BLASTN1597697.gbk
51899973192773327761Island text1.8973630.397630.0646Neighbours21BLASTN1899973.gbk
62415237243837423138Island text1.5158827.869649.3726Neighbours58BLASTN2415237.gbk
72730000275215422155Island text1.5094727.148539.3738Neighbours212730000.gbk
82772976279914826173Island text1.8901229.012547.0933Neighbours212772976.gbk