Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012969: Methylovorus glucosetrophus SIP3-4 chromosome, complete genome

NCBI: NC_012969

Host Lineage: Methylovorus glucosotrophus; Methylovorus; Methylophilaceae; Methylophilales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Fresh water. This organism is able to utilize methylamines, potentially significant greenhouse gases, as a sole source of energy. Methylovorus strains are strictly aerobic with respiratory metabolism, are obligate or restricted facultative methylotrophs, and utilize methanol as the carbon and energy source. They are found in activated sludge, mud, soil, pond water and plants.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1142000*16393921940Island text1.7696533.055125.3198Neighbours11BLASTN+IslandViewer 142000.gbk
21442147146290220756Island text1.5980430.966321.2957Neighbours41BLASTNIslandViewer 1442147.gbk
31574330160402729698Island text2.0743340.615936.6928NeighboursBLASTN+IslandViewer 1574330.gbk
41931595195058118987Island text1.6551629.404832.7567Neighbours45BLASTNIslandViewer 1931595.gbk
52136243*222535089108Island text9.9626256.062917.8898Neighbours21BLASTN+IslandViewer 2136243.gbk
62476318*252045544138Island text2.1046434.335625.8638Neighbours11BLASTNIslandViewer 2476318.gbk