Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_012925: Streptococcus suis P1/7, complete genome

NCBI: NC_012925

Host Lineage: Streptococcus suis; Streptococcus; Streptococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Streptococcus suis is a pathogen of pigs and is responsible for a variety of diseases including meningitis, arthritis and pneumonia. These infections can have substantial economic impact within the swine industry. Occasionally this organism can infect humans causing septicemia, meningitis and endocarditis. Streptococci are Gram-positive, nonmotile, nonsporeforming, catalase-negative cocci that occur in pairs or chains. Members of this genus vary widely in pathogenic potential. Most streptococci are facultative anaerobes, and some are obligate anaerobes.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1293534972520373Island text1.5763928.877741.5495Neighbours16BLASTN+IslandViewer 29353.gbk
214000016217622177Island text1.5396825.15242.8189Neighbours21BLASTN+140000.gbk
319150121448422984Island text2.5066224.911822.8103Neighbours21BLASTN+IslandViewer 191501.gbk
427570429851422811Island text1.4680928.617527.8962Neighbours16BLASTN+275704.gbk
51125876114867522800Island text2.4665324.826317.6921Neighbours21BLASTN+IslandViewer 1125876.gbk
61357783*138009922317Island text1.7842927.238930.6219NeighboursBLASTN+IslandViewer 1357783.gbk
71776450*179459918150Island text1.5355827.553547.722Neighbours16BLASTN+1776450.gbk
81912429*193059918171Island text1.4624825.936329.9245Neighbours21BLASTNIslandViewer 1912429.gbk