Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_012924: Streptococcus suis SC84, complete genome

NCBI: NC_012924

Host Lineage: Streptococcus suis; Streptococcus; Streptococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Streptococcus suis SC84 is a human clinical isolate. Streptococcus suis is a pathogen of pigs and is responsible for a variety of diseases including meningitis, arthritis and pneumonia. These infections can have substantial economic impact within the swine industry. Occasionally this organism can infect humans causing septicemia, meningitis and endocarditis. Causative agent of meningitis, endocarditis, septicemia and arthritis in swine. Streptococci are Gram-positive, nonmotile, nonsporeforming, catalase-negative cocci that occur in pairs or chains. Members of this genus vary widely in pathogenic potential. Most streptococci are facultative anaerobes, and some are obligate anaerobes.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1293534972520373Island text2.6075532.435651.0613Neighbours16BLASTN+29353.gbk
214250016094918450Island text1.5908329.158641.3741Neighbours16BLASTN+142500.gbk
327732529707919755Island text2.4493734.36951.9428Neighbours16BLASTN+277325.gbk
41446190*147069124502Island text1.5292426.562545.0847Neighbours21BLASTN+IslandViewer 1446190.gbk
51860631*188430023670Island text1.513129.231522.0809Neighbours16BLASTN+1860631.gbk
61997052*202009923048Island text2.102130.453845.1857Neighbours21BLASTNIslandViewer 1997052.gbk