Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012918: Geobacter sp. M21 chromosome, complete genome

NCBI: NC_012918

Host Lineage: Geobacter; Geobacter; Geobacteraceae; Desulfuromonadales; Proteobacteria; Bacteria

General Information: Isolation: in situ uranium bioremediation experiment; Country: USA; Temp: Mesophile; Habitat: Fresh water, Sediment, Soil. This strain was isolated from an in situ uranium bioremediation experiment in Rifle, Colorado, USA.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
135601938334427326Island text4.0328347.245224.4884Neighbours33BLASTN356019.gbk
2928903*97932850426Island text3.2127642.646334.6814Neighbours33BLASTN+IslandViewer 928903.gbk
31174412*119441720006Island text3.5558133.983547.0716BLASTN+1174412.gbk
41444333147966935337Island text2.5225229.459126.4865Neighbours33BLASTN+IslandViewer 1444333.gbk
51660477169220131725Island text2.6178936.942530.6083Neighbours33BLASTN+IslandViewer 1660477.gbk
61697860*173703539176Island text3.0357241.303832.4103Neighbours33BLASTN+IslandViewer 1697860.gbk
71814000*183436220363Island text6.1696156.521430.1689Neighbours11BLASTN1814000.gbk
81921891194690225012Island text2.3527831.686729.0048Neighbours11BLASTNIslandViewer 1921891.gbk
92277500230137423875Island text2.9042934.275132.4484Neighbours11BLASTNIslandViewer 2277500.gbk
102569681259384524165Island text2.3643431.769825.0389Neighbours11BLASTNIslandViewer 2569681.gbk
112668031268831620286Island text2.3867632.349937.951Neighbours11BLASTN+2668031.gbk
122758775*280709448320Island text1.8322528.833332.0136Neighbours33BLASTN+IslandViewer 2758775.gbk
132850755287532024566Island text2.5670137.104631.2186Neighbours11BLASTN2850755.gbk
142896671292144924779Island text1.4653330.496138.6527Neighbours111BLASTN2896671.gbk
153009211305086041650Island text2.8087334.749328.1961BLASTNIslandViewer 3009211.gbk
163203136323192328788Island text5.607254.150328.8059Neighbours11BLASTNIslandViewer 3203136.gbk
173558500358118122682Island text3.4271343.529230.7894Neighbours11BLASTN+3558500.gbk
184648220466720818989Island text2.7814534.078138.4301Neighbours11BLASTN+4648220.gbk