Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012912: Dickeya zeae Ech1591, complete genome

NCBI: NC_012912

Host Lineage: Dickeya zeae; Dickeya; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile. The causal agent of onion soft rot. Plant pathogen.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
124270927148728779Island text2.3781140.481130.026Neighbours41BLASTN+IslandViewer 242709.gbk
232591334833122419Island text1.3861832.356530.0219Neighbours51BLASTN325913.gbk
348339052576442375Island text1.6309934.886640.7874Neighbours11BLASTN+IslandViewer 483390.gbk
464736967143624068Island text2.2517637.739129.7235Neighbours51BLASTN+IslandViewer 647369.gbk
5777592*80009922508Island text1.5742833.973735.2418Neighbours51BLASTN777592.gbk
684433986800523667Island text1.7311532.903732.3596Neighbours41BLASTN844339.gbk
71053618108982736210Island text2.0900835.878727.3373Neighbours41BLASTN+IslandViewer 1053618.gbk
81200000*122694026941Island text3.2217244.290833.4838Neighbours41BLASTN+IslandViewer 1200000.gbk
91229333125280123469Island text1.3742832.259234.1089Neighbours51BLASTNIslandViewer 1229333.gbk
101295653131862422972Island text1.5771731.55434.7058Neighbours51BLASTN+IslandViewer 1295653.gbk
111670784169159920816Island text1.806433.126623.4584Neighbours41BLASTNIslandViewer 1670784.gbk
121701231*174963148401Island text2.1281736.245928.8011Neighbours41BLASTN+IslandViewer 1701231.gbk
131788308*184662758320Island text2.5599437.736128.9607Neighbours41BLASTN+IslandViewer 1788308.gbk
142174183220033726155Island text1.7273933.67927.385Neighbours51BLASTN+2174183.gbk
152216749*224082124073Island text1.5952131.656332.5533Neighbours41BLASTN2216749.gbk
162285778231059124814Island text1.6828833.488725.9246Neighbours51BLASTN+2285778.gbk
172426520244512618607Island text1.6095529.985423.0905Neighbours41BLASTN+IslandViewer 2426520.gbk
182553391*257454821158Island text1.9417233.635928.8169Neighbours41BLASTN+IslandViewer 2553391.gbk
192800884*281980818925Island text1.7297131.09516.6403Neighbours51BLASTN2800884.gbk
202901021*292518824168Island text1.5699430.997729.2545Neighbours41BLASTN+IslandViewer 2901021.gbk
212998511302450925999Island text2.7394443.782327.1625Neighbours41BLASTN+2998511.gbk
223749156377027021115Island text1.5231131.183125.2832Neighbours41BLASTN+IslandViewer 3749156.gbk
233853377*389607042694Island text5.263451.569223.6409Neighbours41BLASTN+IslandViewer 3853377.gbk
244012112*403907126960Island text2.4584338.963627.1257Neighbours41BLASTN+IslandViewer 4012112.gbk
254071859411755145693Island text1.85634.328527.6945Neighbours41BLASTN+IslandViewer 4071859.gbk
264167429418510117673Island text1.624730.973417.8889Neighbours41BLASTNIslandViewer 4167429.gbk
274194821*421439319573Island text1.5951631.920826.4679Neighbours41BLASTN+4194821.gbk
284428111445683228722Island text2.9537141.865329.9467Neighbours41BLASTN+IslandViewer 4428111.gbk
294737703476071123009Island text1.7375729.514230.4727Neighbours51BLASTN+4737703.gbk