Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_012891: Streptococcus dysgalactiae subsp. equisimilis GGS_124 chromosome 1,

NCBI: NC_012891

Host Lineage: Streptococcus dysgalactiae; Streptococcus; Streptococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Streptococcus dysgalactiae subsp. equisimilis strains can be isolated from humans and swine. Strains of this subspecies belong to serogroups C and G, and are beta-hemolytic. This organism causes endocarditis, meningitis and septicemia in humans and swine.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
190647192538718917Island text1.5260321.574138.2081Neighbours21BLASTN+906471.gbk
21100726111961918894Island text1.7821323.178138.6466Neighbours21BLASTN+1100726.gbk
31277966131013832173Island text2.321825.338423.1234Neighbours21BLASTN+IslandViewer 1277966.gbk
41573435*161025436820Island text1.6985823.715436.8797NeighboursBLASTN+IslandViewer 1573435.gbk
51949882*196941919538Island text2.3172221.80219.5578Neighbours21BLASTN+1949882.gbk