Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012883: Thermococcus sibiricus MM 739, complete genome

NCBI: NC_012883

Host Lineage: Thermococcus sibiricus; Thermococcus; Thermococcaceae; Thermococcales; Euryarchaeota; Archaea

General Information: Thermococcus sibiricus is a hyperthermophilic anaerobic archaeon isolated from a well of the never flooded oil-bearing Jurassic horizon of the high-temperature Samotlor oil reservoir (Western Siberia). The organism is indigenous to the reservoir and survived over geologic time by metabolizing buried organic matter from the original oceanic sediment.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111633316333Island text1.6698223.269340.1785Neighbours21BLASTN1.gbk
2383086093822631Island text1.8363425.026943.8239Neighbours21BLASTN38308.gbk
3104987*13333828352Island text2.3555735.415740.6844Neighbours21BLASTN104987.gbk
4250758*27487524118Island text1.6215328.307440.2363Neighbours21BLASTN+250758.gbk
5287965*33964451680Island text2.0798627.883737.4752Neighbours21BLASTN+287965.gbk
6360348*38083620489Island text1.5875824.246135.0895Neighbours21BLASTN+360348.gbk
7636560*65959723038Island text1.6194625.886429.6041Neighbours21BLASTN+636560.gbk
869565271829422643Island text1.7449922.86638.9694Neighbours21BLASTN695652.gbk
91283529130692423396Island text1.9111232.811550.4062Neighbours21BLASTN+1283529.gbk
101421644*144618224539Island text1.6997221.738237.2701Neighbours21BLASTN1421644.gbk
111462000148480122802Island text1.8166324.6238.0558Neighbours211462000.gbk
121522920154741724498Island text1.8381728.393328.0504Neighbours36BLASTN+IslandViewer 1522920.gbk
131603744*162651022767Island text1.8615423.261243.2939Neighbours21BLASTN+1603744.gbk
141695703172052824826Island text1.5639723.972536.5331Neighbours21BLASTN+1695703.gbk
151817358184579528438Island text1.4765729.766534.8094Neighbours21BLASTN+IslandViewer 1817358.gbk