Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012881: Desulfovibrio salexigens DSM 2638, complete genome

NCBI: NC_012881

Host Lineage: Desulfovibrio salexigens; Desulfovibrio; Desulfovibrionaceae; Desulfovibrionales; Proteobacteria; Bacteria

General Information: Isolation: mud in British Guyana; Temp: Mesophile; Temp: 37 C; Habitat: Mud. Desulfovibrio are sulfate-reducing bacteria which reduce sulfate to sulfide found in soil, freshwater, saltwater and the intestinal tract of animals. These organisms typically grow anaerobically, although some can tolerate oxygen, and they utilize a wide variety of electron acceptors, including sulfate, sulfur, nitrate, and nitrite, as well as others. A number of toxic metals are reduced, including uranium (VI), chromium (VI) and iron (III), making these organisms of interest as bioremediators. These organisms are responsible for the production of poisonous hydrogen sulfide gas in marine sediments and in terrestrial environments such as drilling sites for petroleum products.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
133425035342519176Island text1.9374229.900322.4997Neighbours23+IslandViewer 334250.gbk
247804249931621275Island text1.4948835.043846.8997Neighbours34BLASTN+478042.gbk
3964823*98847323651Island text1.9073130.018829.3702Neighbours21BLASTN+IslandViewer 964823.gbk
41062629108635823730Island text1.674528.957950.4629Neighbours23+1062629.gbk
51631436164962818193Island text1.5164729.760552.0709Neighbours34BLASTN+1631436.gbk
61802000*184217340174Island text2.0005530.750729.8388Neighbours21BLASTN+IslandViewer 1802000.gbk
72310141*233309622956Island text2.4986131.416436.721Neighbours21BLASTN+IslandViewer 2310141.gbk
82405414243328727874Island text1.7916628.988352.0648Neighbours34BLASTN2405414.gbk
92878000*290020122202Island text2.3820729.517346.2115Neighbours34BLASTNIslandViewer 2878000.gbk
102957309*297631219004Island text1.5386438.937954.961Neighbours34BLASTN+2957309.gbk
113004784303951034727Island text2.5340734.317332.5919Neighbours21BLASTN+IslandViewer 3004784.gbk
123362955*338095618002Island text1.6859930.341137.1483Neighbours34BLASTN3362955.gbk
133520956*354109920144Island text1.7753533.391137.0356Neighbours34BLASTN+IslandViewer 3520956.gbk
143727150*374791020761Island text1.5680537.334351.4968Neighbours34BLASTNIslandViewer 3727150.gbk
154023895404844024546Island text2.148432.586838.7442Neighbours21BLASTNIslandViewer 4023895.gbk
164055962407535919398Island text2.1392628.742130.8137Neighbours21BLASTN+IslandViewer 4055962.gbk
174097552*412001522464Island text1.9434131.352635.3549Neighbours350BLASTNIslandViewer 4097552.gbk