Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012880: Dickeya dadantii Ech703, complete genome

NCBI: NC_012880

Host Lineage: Dickeya dadantii; Dickeya; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile. Dickeya dadantii formerly (Erwinia chrysanthemi) is a phytopathogenic bacterium that causes soft rot diseases on many crops. This organism produces pectinolytic enzymes which break down plant cell walls allowing for the spread of disease.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
113550816052825021Island text1.7647433.43724.4235Neighbours41BLASTN+135508.gbk
291369893533721640Island text1.7784130.4938.4517Neighbours51BLASTN+IslandViewer 913698.gbk
31091486111695125466Island text4.1763846.217216.2592Neighbours41BLASTN+IslandViewer 1091486.gbk
41127997*115596427968Island text1.8217330.961446.0479Neighbours51BLASTN+1127997.gbk
51585255161262427370Island text2.7864139.224225.4953Neighbours51BLASTNIslandViewer 1585255.gbk
61613485164274129257Island text2.3611537.090821.852Neighbours41BLASTN1613485.gbk
71711062*173095119890Island text1.7254830.292428.2129Neighbours51BLASTN+1711062.gbk
81765920*184383077911Island text1.85734.283631.1354Neighbours41BLASTN+IslandViewer 1765920.gbk
92399205*242050221298Island text1.700632.175127.2555Neighbours41BLASTN+2399205.gbk
102425330*245003424705Island text1.9172833.210535.5768Neighbours41BLASTN2425330.gbk
112480000249810318104Island text1.698530.167840.2059Neighbours51BLASTN+2480000.gbk
122778795280217023376Island text2.0938636.533331.4979Neighbours51BLASTN+2778795.gbk
132871480*289700125522Island text2.5615336.191923.1854Neighbours41BLASTN+IslandViewer 2871480.gbk
143125261315478529525Island text3.2162940.80234.7089Neighbours41BLASTN+3125261.gbk
153241886*326491123026Island text1.5874631.341237.3553Neighbours41BLASTN3241886.gbk
163421500*345764636147Island text7.2107154.257120.5743Neighbours41BLASTN+IslandViewer 3421500.gbk
173529017*356582436808Island text1.8800731.852526.6307Neighbours41BLASTN+IslandViewer 3529017.gbk
183645304366681221509Island text2.0039333.329335.3294Neighbours51BLASTN+3645304.gbk
193748665378917040506Island text2.329730.860732.7656Neighbours41BLASTN+IslandViewer 3748665.gbk
203827390385759930210Island text3.2049740.518633.176Neighbours41BLASTN+3827390.gbk
213915500*393874123242Island text1.7238932.5548.9399Neighbours52BLASTN+3915500.gbk
223982383*401264230260Island text3.3444843.064224.0927Neighbours41BLASTN+IslandViewer 3982383.gbk
234117376*413569218317Island text1.53732.514633.5729Neighbours41BLASTN+IslandViewer 4117376.gbk