Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012857: Ralstonia pickettii 12D chromosome 2, complete genome

NCBI: NC_012857

Host Lineage: Ralstonia pickettii; Ralstonia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Isolation: Copper-contaminated sediment from a lake; Country: USA; Temp: Mesophile; Habitat: Fresh water, Host, Soil. Ralstonia pickettii can be isolated from a wide range of environmental and clinical samples. This species is a nocosomial pathogen. It is associated with infections caused by contaminated solutions, such as distilled water and intravenous solutions. Ralstonia pickettii strains resistant to heavy metals have also been isolated from heavy metal contaminated environments.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
141946*7327531330Island text2.2564723.211522.6914Neighbours11BLASTN+IslandViewer 41946.gbk
255791157959921689Island text1.4982522.189120.3187Neighbours11BLASTN557911.gbk
31097400112349826099Island text1.7312320.129435.3692Neighbours11BLASTN+IslandViewer 1097400.gbk