Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012856: Ralstonia pickettii 12D chromosome 1, complete genome

NCBI: NC_012856

Host Lineage: Ralstonia pickettii; Ralstonia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Isolation: Copper-contaminated sediment from a lake; Country: USA; Temp: Mesophile; Habitat: Fresh water, Host, Soil. Ralstonia pickettii can be isolated from a wide range of environmental and clinical samples. This species is a nocosomial pathogen. It is associated with infections caused by contaminated solutions, such as distilled water and intravenous solutions. Ralstonia pickettii strains resistant to heavy metals have also been isolated from heavy metal contaminated environments.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112296322963Island text1.6344127.097519.9111Neighbours11BLASTN+1.gbk
220719423833931146Island text2.2364724.867229.1038Neighbours11BLASTN+207194.gbk
360476763328028514Island text1.6730323.844628.8838Neighbours11BLASTN604767.gbk
4737170*79740260233Island text2.2292427.310425.295Neighbours11BLASTN+737170.gbk
579892282470325782Island text2.5380834.024830.5356Neighbours11BLASTN+798922.gbk
61080000110535625357Island text2.1845625.265929.7101Neighbours11BLASTN+IslandViewer 1080000.gbk
71585989160425818270Island text1.5008922.616737.398Neighbours11BLASTN+1585989.gbk
82266187*228576319577Island text1.6825119.576836.8011Neighbours11BLASTN2266187.gbk
92633890266223728348Island text1.9866426.249424.4568Neighbours11BLASTN+2633890.gbk
102815797284959333797Island text1.799923.504125.1793Neighbours11BLASTNIslandViewer 2815797.gbk
112931995295427722283Island text1.5069323.492232.9516Neighbours11BLASTN+IslandViewer 2931995.gbk
123000839*302487724039Island text1.5970723.370627.0075Neighbours11BLASTN+3000839.gbk
133270709329159920891Island text1.5494823.204422.0601Neighbours11BLASTN+IslandViewer 3270709.gbk
143615550*364899933450Island text2.2131224.94325.7564Neighbours11BLASTN+3615550.gbk