Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012846: Bartonella grahamii as4aup, complete genome

NCBI: NC_012846

Host Lineage: Bartonella grahamii; Bartonella; Bartonellaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Bartonella grahamii (strain as4aup) is Gram-negative bacterium isolated from a wood mouse (Apodemus sylvaticus) in central Sweden. Bartonella are human and animal pathogens which infect erythrocytes and can cause angiogenic lesions. These organisms cause diseases in humans such as Oroya fever, Trench fever, endocarditis, and Cat Scratch disease. Transmission of this organism is via the bite of a blood-sucking arthropod. Bartonella grahamii can be isolated from the blood of rodents and is found world wide. Fleas may be the transmission vector for Bartonella grahamii to other rodents. Human disease appears to be rare and associated with an immunocompromised state.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
119936524748348119Island text1.5554525.437337.7023Neighbours21BLASTN199365.gbk
2825341*84359918259Island text1.5341924.957444.0157Neighbours21BLASTN825341.gbk
392957095327323704Island text1.5438534.457139.5618Neighbours21BLASTN+929570.gbk
4986877102533738461Island text1.7398831.945543.0255Neighbours21BLASTN+986877.gbk
51147000*116490817909Island text1.5246925.398240.2059Neighbours21BLASTN+1147000.gbk
61467446*149844831003Island text1.6118527.696946.3046Neighbours21BLASTN+1467446.gbk
71551000157244221443Island text1.5481626.649642.6585Neighbours21BLASTN1551000.gbk
81679184*170209922916Island text2.0365426.065243.7589Neighbours21BLASTN1679184.gbk
91708840173059921760Island text1.7137934.04438.4916Neighbours21BLASTN+1708840.gbk
101741000*176497623977Island text1.9311730.806239.1278Neighbours21BLASTNIslandViewer 1741000.gbk
111778443180309924657Island text1.698934.151332.1164Neighbours21BLASTN+IslandViewer 1778443.gbk
121837924*187467336750Island text1.5399427.776636.6287Neighbours21BLASTN+1837924.gbk
131888000*190953121532Island text1.9954430.876440.7624Neighbours21BLASTNIslandViewer 1888000.gbk
141952178197441022233Island text1.6348636.058232.2651Neighbours21BLASTN+1952178.gbk
152004711*202983225122Island text1.7124627.9545.0059Neighbours314BLASTN+2004711.gbk
162154000*217726123262Island text1.4611927.936549.8234Neighbours21BLASTN+2154000.gbk
172299282232146122180Island text2.4512227.554445.3456Neighbours21BLASTN+2299282.gbk