Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_012815: Bifidobacterium animalis subsp. lactis DSM 10140, complete genome

NCBI: NC_012815

Host Lineage: Bifidobacterium animalis; Bifidobacterium; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria

General Information: Bifidobacterium animalis subsp. lactis (strain DSM 10140 / JCM 10602 / LMG 18314) is an anaerobic Gram-positive lactic acid bacterium commonly found in the guts of healthy humans and has been identified in the infant gut biota, particularly in ileal, fecal, and mucosal samples. Some strains of B. animalis subsp. lactis are able to survive in the GIT, to adhere to human epithelial cells in vitro, to modify fecal flora, to modulate the host immune response, or to prevent microbial gastroenteritis and colitis.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1230005344230443Island text2.4001235.490641.313Neighbours11BLASTN+IslandViewer 23000.gbk
2669436*69184122406Island text1.6440929.989223.3669Neighbours11BLASTN+669436.gbk
31092795*111559922805Island text1.6111228.341122.7001Neighbours11BLASTN+IslandViewer 1092795.gbk
41357003*138008223080Island text1.5882526.003843.4011Neighbours11BLASTN+IslandViewer 1357003.gbk
51465670*148782122152Island text1.7760426.385640.2323Neighbours11BLASTN+1465670.gbk
61494263152487730615Island text2.024734.74133.974Neighbours11BLASTN+IslandViewer 1494263.gbk
71603916165709953184Island text2.1826832.497628.1626Neighbours116BLASTN+IslandViewer 1603916.gbk
81682872*171014027269Island text2.2443231.099327.9342Neighbours11BLASTNIslandViewer 1682872.gbk
91757992*178040722416Island text1.5771524.854135.4184Neighbours11BLASTN1757992.gbk
101862373*188610023728Island text1.5737823.790133.1222Neighbours11BLASTN+1862373.gbk