Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_012806: Mycoplasma conjunctivae, complete genome

NCBI: NC_012806

Host Lineage: Mycoplasma conjunctivae; Mycoplasma; Mycoplasmataceae; Mycoplasmatales; Tenericutes; Bacteria

General Information: Mycoplasma conjunctivae causes infectious keratoconjunctivitis in domestic and wild sheep and goats. In domestic animals treatment with antibiotics is effective, however, in wild animals this disease can lead to blindness and death. The primary habitats of human and animal mycoplasmas are mucous membranes of the respiratory and urogenital tracts, eyes, mammary glands and the joints.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1105133*14579440662Island text1.4218514.004725.2223Neighbours21BLASTN+IslandViewer 105133.gbk
227595229819922248Island text1.5531313.717324.4206Neighbours21BLASTNIslandViewer 275952.gbk
348029750136221066Island text1.522514.124225.4876Neighbours21BLASTNIslandViewer 480297.gbk
454371556765023936Island text1.5584413.172323.6054Neighbours21BLASTN+IslandViewer 543715.gbk
5818592*84567427083Island text1.7203416.867323.4418Neighbours21BLASTN+818592.gbk