Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012804: Thermococcus gammatolerans EJ3, complete genome

NCBI: NC_012804

Host Lineage: Thermococcus gammatolerans; Thermococcus; Thermococcaceae; Thermococcales; Euryarchaeota; Archaea

General Information: Hyperthermophilic radioresistant marine archaeon. Thermococcus gammatolerans was isolated from hydrothermal vent chimneys located in the mid-Atlantic Ridge and Guyamas basin. When exposed to gamma radiation, this organism has a survival curve similar to Deinococcus radiodurans.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112243422434Island text2.0415742.673928.6119Neighbours313BLASTNIslandViewer 1.gbk
2141914*16499223079Island text1.6101631.721220.7029Neighbours313BLASTN+141914.gbk
3271459*29726925811Island text1.8529240.923428.7649Neighbours313BLASTNIslandViewer 271459.gbk
434823537323224998Island text1.6051839.759628.2143Neighbours313BLASTN+IslandViewer 348235.gbk
5611444*63459123148Island text1.5260934.890344.306Neighbours313BLASTN+IslandViewer 611444.gbk
6816961*84083923879Island text1.9463139.143438.2314Neighbours313BLASTN+IslandViewer 816961.gbk
790353993446930931Island text1.5461530.048248.456Neighbours313BLASTN903539.gbk
81372667*140277430108Island text1.8847340.364842.9257Neighbours313BLASTN+IslandViewer 1372667.gbk
91431465*145471423250Island text1.5375233.608952.6008Neighbours313BLASTN1431465.gbk
101514533154025525723Island text1.7108833.856651.6217Neighbours313BLASTN+1514533.gbk
111940500*196268822189Island text1.8328231.283426.4831Neighbours313BLASTN+1940500.gbk
122017531204799930469Island text2.5421746.935421.9024Neighbours313BLASTNIslandViewer 2017531.gbk