Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012803: Micrococcus luteus NCTC 2665, complete genome

NCBI: NC_012803

Host Lineage: Micrococcus luteus; Micrococcus; Micrococcaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Soil. Micrococcus luteus NCTC 2665 has potential in bioremediation due to its ability to sequester metals (i.e. gold and strontium), and it is being used for gold concentration from low-abundance ores. Micrococcus luteus was originally isolated by Alexander Fleming in 1929 as Micrococcus lysodeikticus. This organism can be found in many environments including soil, water, animals, and dairy products. Micrococcus luteus is able to survive in the environment for long periods and has been isolated from inclusions in amber.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
13691*4264438954Island text1.7099212.987616.5653Neighbours11BLASTN+IslandViewer 3691.gbk
2361127*38262921503Island text1.6016613.868814.1291Neighbours11BLASTN+361127.gbk
3691215*72678835574Island text2.0173214.882319.1289Neighbours11BLASTN+IslandViewer 691215.gbk
41094679*111581321135Island text2.6521614.626915.8996Neighbours11BLASTN+1094679.gbk
51117875114878330909Island text2.0761315.263414.6316Neighbours11BLASTN+IslandViewer 1117875.gbk
61302261132380421544Island text1.7192413.389718.3276Neighbours11BLASTN+IslandViewer 1302261.gbk
71373500*139406920570Island text2.7122213.359913.806Neighbours11BLASTN+1373500.gbk
81519138153782318686Island text1.7389211.88914.9287Neighbours11BLASTN+IslandViewer 1519138.gbk
91552122*157996027839Island text4.2223219.295225.3274Neighbours11BLASTN+1552122.gbk
101753138177628023143Island text2.4989713.618712.5173Neighbours11BLASTN+IslandViewer 1753138.gbk
111839809*185813118323Island text1.5025214.86521.1962Neighbours11BLASTN1839809.gbk
121980955200418223228Island text1.6738513.385911.732Neighbours11BLASTN+IslandViewer 1980955.gbk
132195808*224976153954Island text2.3780714.001813.4918Neighbours11BLASTN+IslandViewer 2195808.gbk
142454380*247509920720Island text4.2294113.902911.8259Neighbours11BLASTN+IslandViewer 2454380.gbk