Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012796: Desulfovibrio magneticus RS-1, complete genome

NCBI: NC_012796

Host Lineage: Desulfovibrio magneticus; Desulfovibrio; Desulfovibrionaceae; Desulfovibrionales; Proteobacteria; Bacteria

General Information: Isolated from freshwater sulfide-rich mud of a waterway near Kameno river, Wakayama, in Japan. This organism is a sulfate-reducing delta proteobacterium which synthesizes intracellular magnetite particles. Desulfovibrio magneticus produces irregular, membrane-bound magnetite particles, unlike other magnetite-producing bacteria which contain crystalline magnetite in the cytoplasm. Desulfovibrio magneticus does not migrate along a magnetic field but swims randomly.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
177071*11867541605Island text7.6956555.817321.9301Neighbours32BLASTN+IslandViewer 77071.gbk
212950014715917660Island text3.6379538.2628.9804Neighbours11BLASTN+IslandViewer 129500.gbk
334500036635021351Island text3.7021243.617641.3007Neighbours11+IslandViewer 345000.gbk
4985000*100352118522Island text3.3146538.518425.6243Neighbours33BLASTNIslandViewer 985000.gbk
51049034*1180099131066Island text6.6200458.334332.0185Neighbours32BLASTN+IslandViewer 1049034.gbk
61600600163027529676Island text3.8278748.317220.5695Neighbours31BLASTNIslandViewer 1600600.gbk
71645856*167642430569Island text6.0272353.607628.8967Neighbours33BLASTN+IslandViewer 1645856.gbk
82041579*206459923021Island text3.4374238.643931.3129Neighbours33BLASTNIslandViewer 2041579.gbk
92090000*211372323724Island text4.9990341.802337.8047Neighbours11BLASTN+IslandViewer 2090000.gbk
102683711*270614022430Island text3.5449535.268731.0878Neighbours11BLASTNIslandViewer 2683711.gbk
112757500278924331744Island text5.8490452.817341.6553Neighbours33IslandViewer 2757500.gbk
123267569*331498647418Island text5.5709352.612125.2483Neighbours11BLASTN+IslandViewer 3267569.gbk
133374911*344075765847Island text5.0147248.468541.5292Neighbours23BLASTN+IslandViewer 3374911.gbk
143600630*368962888999Island text6.8216260.925926.7794Neighbours32BLASTN+IslandViewer 3600630.gbk
154075583*4200283124701Island text5.8460556.219623.6637Neighbours32BLASTN+IslandViewer 4075583.gbk
164693500474722853729Island text5.0652744.527931.187Neighbours33BLASTN+IslandViewer 4693500.gbk