Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012793: Geobacillus sp. WCH70, complete genome

NCBI: NC_012793

Host Lineage: Geobacillus; Geobacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Temp: Thermophile. Recent rDNA analysis and DNA-DNA hybridization studies using spore-forming thermophilic subsurface isolates from formation waters of oilfields in Russia, Kazakhstan and China provided enough evidence to define the phylogenetically distinct, physiologically and morphologically consistent taxon Geobacillus. Geobacillus species are chemo-organotrophic, obligately thermophilic, neutrophilic, motile, spore-forming, aerobic or facultatively anaerobic Gram-positive bacterium.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1383612*41809034479Island text1.921428.121823.4297Neighbours21BLASTN+IslandViewer 383612.gbk
21718000174834430345Island text2.5039227.687320.6653Neighbours21BLASTN+IslandViewer 1718000.gbk
32122036*214675524720Island text1.6668226.206828.815NeighboursBLASTN+IslandViewer 2122036.gbk
42337776236019822423Island text1.494430.155625.3624Neighbours11BLASTN+2337776.gbk
53035978305768121704Island text1.5105327.255645.511Neighbours325BLASTN3035978.gbk
63096095314218446090Island text1.6398829.703121.9284Neighbours21BLASTN+IslandViewer 3096095.gbk
73243727326909925373Island text1.6537433.549427.9924Neighbours31BLASTN+IslandViewer 3243727.gbk
83275751*330479129041Island text2.5879128.450823.2915Neighbours21BLASTN+IslandViewer 3275751.gbk