Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012785: Kosmotoga olearia TBF 19.5.1, complete genome

NCBI: NC_012785

Host Lineage: Kosmotoga olearia; Kosmotoga; Thermotogaceae; Thermotogales; Thermotogae; Bacteria

General Information: Gram-negative bacterium Kosmotoga olearia TBF 19.5.1 was isolated from an oil deposit. Broad temperature growth range. This organism is a member of the Thermotogales and has the characteristic morphology of one or more cells contained in a sheath-like envelope which extends beyond the cell wall. Preliminary sequencing of Thermotogales genomes has identified extensive horizontal gene transfer between these organisms and the Archaea.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
120454*4833027877Island text1.6992526.129334.9758Neighbours317BLASTN20454.gbk
220550223377428273Island text1.8238131.261143.5752Neighbours317BLASTN+205502.gbk
363800066146623467Island text1.4391325.480338.001Neighbours21BLASTN+638000.gbk
41960500*198166221163Island text1.7155329.238344.1726Neighbours317BLASTN+1960500.gbk
51988527200818119655Island text1.8728625.813243.767Neighbours21BLASTN1988527.gbk
62010668*203802727360Island text1.8756729.109643.6802Neighbours317BLASTN2010668.gbk