Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012778: Eubacterium eligens ATCC 27750, complete genome

NCBI: NC_012778

Host Lineage: Eubacterium eligens; Eubacterium; Eubacteriaceae; Clostridiales; Firmicutes; Bacteria

General Information: Eubacterium eligens ATCC 27750 is part of the normal human gut flora. This genus has been isolated as normal flora from feces, rumen, and periodontal tissue. Eubacterium spp. are thought to play a beneficial role in maintaining the normal ecology of the large intestine, in part by producing chemicals like butyric acid which act to inhibit the growth of other bacteria. These organisms are occasionally isolated from wounds and abscesses and may be an opportunistic pathogen. This genus has also been isolated from sewage and soil.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
12997*2589522899Island text3.4419528.172652.463Neighbours21BLASTN2997.gbk
213706415801220949Island text1.7030924.228841.5435Neighbours21BLASTN+137064.gbk
320741523098423570Island text1.7400823.045435.4428Neighbours21BLASTN+IslandViewer 207415.gbk
422950324880419302Island text3.1373123.8632.0624Neighbours21BLASTN+IslandViewer 229503.gbk
526324129536232122Island text3.5642326.035228.7634Neighbours21BLASTN263241.gbk
6364728*38950524778Island text1.673923.440542.9102Neighbours21364728.gbk
7403962*42480720846Island text3.4580826.40952.549Neighbours21BLASTN403962.gbk
8688621*70872420104Island text3.5398926.746452.8429Neighbours21BLASTN688621.gbk
9748143*77018222040Island text1.6027423.940945.2689Neighbours21BLASTN748143.gbk
10841934*89007548142Island text2.8209125.432348.3082Neighbours21BLASTN841934.gbk
111573847160119927353Island text1.8006226.963133.818Neighbours21BLASTNIslandViewer 1573847.gbk
121778654180274524092Island text1.5243123.908747.4296Neighbours21BLASTN1778654.gbk
131819559185747337915Island text1.7674124.034427.8181Neighbours21BLASTN+IslandViewer 1819559.gbk
141946924197078623863Island text1.5148524.130640.4556Neighbours21BLASTN+1946924.gbk
152015409*203979424386Island text2.2182127.950248.4853Neighbours21BLASTN2015409.gbk
162049694*207227422581Island text1.5243522.911644.3842Neighbours21BLASTN2049694.gbk