Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012751: Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), complete

NCBI: NC_012751

Host Lineage: Hamiltonella defensa; Hamiltonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Candidatus Hamiltonella defensa 5AT was isolated from the pea aphid Acyrthosiphon pisum. Candidatus Hamiltonella defensa is a secondary endosymbiont of aphids. This organism protects the aphid host by killing parasitic wasp larvae.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1275336*29828722952Island text1.4683332.794333.8714Neighbours356BLASTN+275336.gbk
240933343221322881Island text1.3160942.819831.77Neighbours356BLASTN+409333.gbk
3594851*61768022830Island text1.6679636.81151.539Neighbours356BLASTN+594851.gbk
4899394*92562326230Island text1.7747641.165725.7789Neighbours41BLASTN+899394.gbk
594231597954737233Island text1.7828739.334832.6988Neighbours356BLASTN+IslandViewer 942315.gbk
61071589108962118033Island text1.4916433.049642.63Neighbours41BLASTN+IslandViewer 1071589.gbk
71190206*121514924944Island text2.0343135.18255.0679Neighbours356BLASTN+1190206.gbk
81296877131730020424Island text1.4933133.548229.4697Neighbours356BLASTN+IslandViewer 1296877.gbk
91538500*155962621127Island text1.6432438.795729.7912NeighboursBLASTN+1538500.gbk
101988280201476926490Island text1.9908944.046231.1318Neighbours356BLASTN+IslandViewer 1988280.gbk