Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_012730: Rickettsia peacockii str. Rustic, complete genome

NCBI: NC_012730

Host Lineage: Rickettsia peacockii; Rickettsia; Rickettsiaceae; Rickettsiales; Proteobacteria; Bacteria

General Information: Rickettsia peacockii was initially identified in wood ticks from the eastern side of the Bitterroot Valley in Montana. Cases of Rocky Mountain spotted fever in the Bitterroot Valley are associated with exposure to ticks from the western side. Ticks from the east side are primarily infected with R. peacockii which is nonvirulent and may prevent the establishment of pathogenic Rickettsia species in these ticks.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1131445*15343621992Island text2.0765113.657924.9155Neighbours21BLASTN+131445.gbk
2293634*31769424061Island text1.8016315.599427.8733Neighbours21BLASTN+293634.gbk
333250035137618877Island text1.805512.662623.1189Neighbours21BLASTN+332500.gbk
4411526*43309921574Island text2.3477811.902222.5301Neighbours21BLASTN+411526.gbk
5652092*67059918508Island text1.4847414.238823.3281Neighbours21BLASTN652092.gbk
61034115*106009925985Island text2.1060113.587626.3198Neighbours21BLASTN+1034115.gbk