Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012724: Burkholderia glumae BGR1 chromosome 1, complete genome

NCBI: NC_012724

Host Lineage: Burkholderia glumae; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Burkholderia glumae causes seedling rot and panicle blight of rice. Panicle blight is a significant problem in the southern USA during unusually warm growing seasons. Infection of rice with Burkholderia glumae causes sterility, or abortion, of the rice kernels, and may inhibit seed germination. Burkholderia glumae also produces an industrially important extracellular lipase.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*1851018510Island text1.4589217.880620.7882Neighbours11BLASTN1.gbk
214745417238824935Island text1.8153724.019821.9951Neighbours11BLASTN+147454.gbk
3359444*38978130338Island text2.030321.933724.2057Neighbours11BLASTN+IslandViewer 359444.gbk
482983085458124752Island text2.7498226.878633.3096Neighbours11BLASTN+829830.gbk
51308000132909921100Island text1.57117.102415.952NeighboursBLASTN+1308000.gbk
61781554180509923546Island text2.7312925.581121.6885Neighbours11BLASTN+1781554.gbk
71892000191853026531Island text1.6919923.373417.1383Neighbours11BLASTN+1892000.gbk
81914740194049525756Island text1.6581215.503412.0173Neighbours11BLASTN+1914740.gbk
92068588209611727530Island text1.755617.3799.6114Neighbours11BLASTN+IslandViewer 2068588.gbk
102202173222518523013Island text1.6729819.164219.238Neighbours11BLASTN+2202173.gbk
112443500246405820559Island text1.8508818.044712.2414Neighbours11BLASTN+2443500.gbk
122547500258413336634Island text1.7916218.685918.1537Neighbours11BLASTN+2547500.gbk
132611000263159920600Island text1.5867719.427520.5228Neighbours11BLASTN+IslandViewer 2611000.gbk
142682154271559933446Island text1.6294720.873216.1866Neighbours11BLASTNIslandViewer 2682154.gbk
153070386309007619691Island text2.1633919.503931.5142Neighbours11BLASTN+3070386.gbk
163100430312207221643Island text1.5523418.654122.5987NeighboursBLASTN+IslandViewer 3100430.gbk
173222415324513122717Island text1.8396619.8213.2553Neighbours11BLASTN+IslandViewer 3222415.gbk