Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012721: Burkholderia glumae BGR1 chromosome 2, complete genome

NCBI: NC_012721

Host Lineage: Burkholderia glumae; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Burkholderia glumae causes seedling rot and panicle blight of rice. Panicle blight is a significant problem in the southern USA during unusually warm growing seasons. Infection of rice with Burkholderia glumae causes sterility, or abortion, of the rice kernels, and may inhibit seed germination. Burkholderia glumae also produces an industrially important extracellular lipase.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
110950012980920310Island text1.7590119.748123.1534Neighbours11BLASTNIslandViewer 109500.gbk
213704615927722232Island text1.7913517.625211.5201Neighbours11BLASTN+IslandViewer 137046.gbk
318296520829525331Island text2.4455525.037222.4989Neighbours11BLASTNIslandViewer 182965.gbk
424000026711727118Island text2.5587722.603726.3826Neighbours11BLASTNIslandViewer 240000.gbk
571088773446523579Island text2.1516318.91317.6142Neighbours11BLASTN+IslandViewer 710887.gbk
6770651*83681366163Island text2.2076221.229314.7457Neighbours11BLASTN+IslandViewer 770651.gbk
7979656100222522570Island text1.4877916.208718.5589Neighbours11BLASTN+IslandViewer 979656.gbk
81052883*107472021838Island text1.9994517.069112.4603Neighbours11BLASTN+IslandViewer 1052883.gbk
91395417142220626790Island text2.4398121.170124.9074Neighbours11BLASTNIslandViewer 1395417.gbk
101635999166922033222Island text1.7824715.363611.9016Neighbours11BLASTN+IslandViewer 1635999.gbk
111686450170480118352Island text1.476315.509519.0766Neighbours11BLASTN+IslandViewer 1686450.gbk
121986436*201260326168Island text2.2991521.471915.5466Neighbours11BLASTN+IslandViewer 1986436.gbk
132021885204943027546Island text2.4735621.621716.5347Neighbours11BLASTN+IslandViewer 2021885.gbk
142223641224859924959Island text1.9564521.488323.4588Neighbours11BLASTN+2223641.gbk
152406874243009923226Island text1.4933417.552318.0168Neighbours11BLASTN+IslandViewer 2406874.gbk
162556160260386447705Island text2.3890320.998216.727Neighbours11BLASTN+IslandViewer 2556160.gbk
172694829272122926401Island text1.7917918.855316.8662Neighbours11BLASTN+IslandViewer 2694829.gbk