Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012718: Burkholderia glumae BGR1 plasmid bglu_2p, complete sequence

NCBI: NC_012718

Host Lineage: Burkholderia glumae; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Burkholderia glumae causes seedling rot and panicle blight of rice. Panicle blight is a significant problem in the southern USA during unusually warm growing seasons. Infection of rice with Burkholderia glumae causes sterility, or abortion, of the rice kernels, and may inhibit seed germination. Burkholderia glumae also produces an industrially important extracellular lipase.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1270894664919561Island text1.5383226.957739.3927Neighbours11BLASTN+27089.gbk