Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012704: Corynebacterium kroppenstedtii DSM 44385, complete genome

NCBI: NC_012704

Host Lineage: Corynebacterium kroppenstedtii; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism has been isolated from abscesses however its pathogenicity is unknown. Corynybacterium kroppenstedtii DSM 44385 was isolated from sputum of an 82-year-old female with pulmonary disease. Corynybacterium without mycolic acid in the cell wall.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1574378631028874Island text2.154335.217937.6104Neighbours11BLASTN+IslandViewer 57437.gbk
2376783*40217325391Island text1.7553334.174941.5124Neighbours11BLASTN376783.gbk
3652589*67634423756Island text1.9208428.42954.6687Neighbours11BLASTN652589.gbk
469637471709920726Island text1.5557530.344140.7774Neighbours11BLASTN696374.gbk
5947409*97041123003Island text1.431828.708739.1826Neighbours11BLASTN947409.gbk
61641684*166548523802Island text1.68530.125243.284Neighbours11BLASTN+1641684.gbk
71701805*172422322419Island text1.5066731.256144.3172Neighbours11BLASTN+1701805.gbk
81747539*177324825710Island text1.68434.834937.0203Neighbours11BLASTN+1747539.gbk
91870000191851248513Island text1.7408530.392451.6319Neighbours11BLASTNIslandViewer 1870000.gbk
101979183200242723245Island text1.3771929.511243.7081Neighbours11BLASTN+1979183.gbk
112296500*231998023481Island text2.0619439.233936.7475Neighbours11BLASTN2296500.gbk
122347969*237268924721Island text1.9455335.393933.7572Neighbours11BLASTN+2347969.gbk