Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012691: Tolumonas auensis DSM 9187, complete genome

NCBI: NC_012691

Host Lineage: Tolumonas auensis; Tolumonas; Aeromonadaceae; Aeromonadales; Proteobacteria; Bacteria

General Information: Isolation: freshwater mud; Temp: Mesophile; Habitat: Fresh water, Mud; Isolation: sediment of freshwater lake; Country:Switzerland. Tolumonas auensis is able to produce the aromatic hydrocarbon tolulene when grown on phenylalanine, phenyllactate,and phenylpyruvate with a separate carbon source. This organism can also produce tyrosines when grown with phenol.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
124140426512723724Island text2.1702134.192625.9654Neighbours41BLASTN+241404.gbk
2779826*80263722812Island text3.0857436.910319.2769Neighbours41BLASTN+IslandViewer 779826.gbk
31144715116829523581Island text2.0334537.839113.4304Neighbours41BLASTN+1144715.gbk
41250385127625725873Island text1.7885933.694121.7688Neighbours21BLASTN+IslandViewer 1250385.gbk
51743038178035537318Island text2.8080139.356219.1915Neighbours21BLASTN+IslandViewer 1743038.gbk
62050957*206859917643Island text2.0887731.444619.5395Neighbours41BLASTN+IslandViewer 2050957.gbk
72097287*211808120795Island text1.6658235.912327.1876Neighbours41BLASTNIslandViewer 2097287.gbk
82146473217078724315Island text2.7020138.783323.2869Neighbours41BLASTN+IslandViewer 2146473.gbk
92225000224630921310Island text2.3173536.555437.5311Neighbours41BLASTNIslandViewer 2225000.gbk
102476223251032334101Island text2.0219234.213322.4125NeighboursBLASTN+IslandViewer 2476223.gbk
112614603*2727599112997Island text2.3642244.562519.3776Neighbours11BLASTN+IslandViewer 2614603.gbk
123126500315237825879Island text4.0549740.594625.5759Neighbours41BLASTNIslandViewer 3126500.gbk