Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012673: Exiguobacterium sp. AT1b, complete genome

NCBI: NC_012673

Host Lineage: Exiguobacterium; Exiguobacterium; Bacillales Family XII; Bacillales; Firmicutes; Bacteria

General Information: Isolation: Yellowstone National Park; Country: USA; Temp: Thermophile. Isolated from a slightly alkaline, highly carbonate hot spring water sample from Angel Terrace, which is part of Mammoth Terrace, Yellowstone National Park.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
114092140921Island text1.6631436.592753.2634BLASTN+1.gbk
277610*9757519966Island text1.7124130.41518.0808Neighbours324BLASTN+77610.gbk
3785718*81083025113Island text2.058934.264820.508Neighbours324BLASTN+IslandViewer 785718.gbk
41046016107916333148Island text1.5595731.239732.2325Neighbours324BLASTNIslandViewer 1046016.gbk
51540000*156249622497Island text1.9483541.494453.4383Neighbours324BLASTN+1540000.gbk
61600242*162036820127Island text1.5539131.679652.2191Neighbours324BLASTN1600242.gbk
71650139*166872118583Island text1.9584633.818754.9945Neighbours324BLASTN1650139.gbk
81679744*169891319170Island text1.6561235.922352.0526Neighbours324BLASTN1679744.gbk
92023297*204277319477Island text1.7100535.025552.951Neighbours324BLASTN2023297.gbk
102064298209009925802Island text2.3342635.692630.865Neighbours324BLASTN+2064298.gbk
112152639*217371821080Island text1.9420242.248951.073Neighbours324BLASTN2152639.gbk
122368971*238860519635Island text1.768232.680849.7097Neighbours324BLASTN+2368971.gbk
132535427258259947173Island text2.7314437.895218.3226Neighbours21BLASTN+IslandViewer 2535427.gbk