Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012669: Beutenbergia cavernae DSM 12333, complete genome

NCBI: NC_012669

Host Lineage: Beutenbergia cavernae; Beutenbergia; Beutenbergiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Isolation: Cave soil in Guangxi, China; Country: China; Temp: Mesophile; Temp: 28 degrees C; Habitat: Soil. Gram-positive, non-motile, non-spore-forming bacterium.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
19696612177224807Island text1.842115.802318.2549Neighbours11BLASTNIslandViewer 96966.gbk
254950057165522156Island text1.6779415.848718.9597Neighbours11BLASTN549500.gbk
383255585839125837Island text1.6595815.275420.36Neighbours11BLASTN+832555.gbk
41011473*103451623044Island text1.5297314.17812.937Neighbours11BLASTN+1011473.gbk
51493774151546921696Island text1.4950811.095614.6303Neighbours11BLASTN+1493774.gbk
61700626173294232317Island text1.7543213.871912.8464Neighbours11BLASTN+1700626.gbk
72399649*242257022922Island text1.8381210.159310.3545Neighbours11BLASTNIslandViewer 2399649.gbk
84118230414262824399Island text1.5325611.46649.90376Neighbours11BLASTN+4118230.gbk
94323490434262819139Island text1.5467314.986613.3268Neighbours11BLASTNIslandViewer 4323490.gbk