Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012632: Sulfolobus islandicus M.16.27 chromosome, complete genome

NCBI: NC_012632

Host Lineage: Sulfolobus islandicus; Sulfolobus; Sulfolobaceae; Sulfolobales; Crenarchaeota; Archaea

General Information: This strain was isolated from a hot spring on the Kamchatka Penninsula, in the Russian Far East. Hyperthermophilic acidophilic sulfur-metabolizing archeon. Sulfolobus islandicus is a thermo-acidophilic archeae commonly identified in hot, acidic sulfur springs. This organism can grow both chemoautotrophically, using sulfur or hydrogen sulfide, and heterotrophically. S. islandicus can play host to a number of plasmids and viruses which may be useful in developing tools for genetic analysis. In addition, Sulfolobus islandicus isolates from different areas in Russia, Iceland, and the United States have been shown to be genetically distinct from each other making this organism useful for comparative analysis.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
18759011063223043Island text2.3963919.722839.4141Neighbours21BLASTN+87590.gbk
224398226623322252Island text2.1565419.014537.867Neighbours323BLASTN+243982.gbk
353896756255723591Island text1.4184119.364121.3972Neighbours323BLASTN+538967.gbk
463834765988921543Island text1.826619.803629.0338Neighbours21BLASTN638347.gbk
581600083843722438Island text1.6517618.36732.6105Neighbours323BLASTN+816000.gbk
688481190619621386Island text2.2414119.298733.3013Neighbours21BLASTN884811.gbk
791300093809925100Island text2.1630422.000538.2438Neighbours21BLASTN+913000.gbk
894310496628123178Island text1.6450323.680737.8913Neighbours323BLASTN943104.gbk
91212780123400221223Island text1.6687418.148132.3365Neighbours323BLASTN+1212780.gbk
101249334127209922766Island text2.4248717.050733.5242Neighbours21BLASTN1249334.gbk
111399017*142947930463Island text2.3868219.534636.5437Neighbours21BLASTN1399017.gbk
121518520*154170523186Island text2.5067118.704435.0428Neighbours21BLASTN1518520.gbk
131543735*156664522911Island text2.6741119.175636.661Neighbours21BLASTN1543735.gbk
141568170*159136723198Island text2.4799321.232238.417Neighbours21BLASTN+1568170.gbk
151710223*173012919907Island text1.6346320.195828.5662Neighbours323BLASTN1710223.gbk
161745921*176543819518Island text3.0871818.533228.6271Neighbours21BLASTN1745921.gbk
171785210*180482719618Island text2.3049818.470329.9641Neighbours21BLASTN1785210.gbk
181851991*187277520785Island text2.5371819.526533.1334Neighbours21BLASTN1851991.gbk
191892112*191358121470Island text2.9749418.770333.0034Neighbours21BLASTN+1892112.gbk
201980332*200214521814Island text2.2208419.705734.609Neighbours21BLASTN+1980332.gbk
212279544230244622903Island text2.0191816.761932.8725Neighbours21BLASTN+2279544.gbk
222352784237297320190Island text2.1010119.041830.5457Neighbours21BLASTN2352784.gbk
232390831241188521055Island text1.7215120.423728.8681Neighbours21BLASTN2390831.gbk
242415739*244835232614Island text1.664819.767222.9485Neighbours323BLASTN+2415739.gbk
252564801258768222882Island text2.131719.899131.7134Neighbours323BLASTN+2564801.gbk
262654200267565821459Island text1.5912219.030431.5941Neighbours323BLASTN2654200.gbk