Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012590: Corynebacterium aurimucosum ATCC 700975, complete genome

NCBI: NC_012590

Host Lineage: Corynebacterium aurimucosum; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Corynebacterium aurimucosum ATCC 700975 (DSM 44827) was isolated from the human female urogenital tract. Corynebacterium aurimucosum has been isolated from a number of clinical samples including blood and infected bone, however it is not known what role this organism may have in the development of disease. This organism is also isolated from healthy female urogenital tract samples and is considered part of the normal microbial community.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
137697*7357935883Island text3.0611834.526335.5173Neighbours11BLASTN+IslandViewer 37697.gbk
219389521817724283Island text1.8532527.585641.9357Neighbours11BLASTN193895.gbk
328479330402619234Island text2.0934425.510741.2657Neighbours11BLASTN+284793.gbk
463765166603928389Island text1.5678326.295141.7029Neighbours11BLASTN+IslandViewer 637651.gbk
5850130*87382523696Island text1.7697328.011527.3702Neighbours11BLASTN+IslandViewer 850130.gbk
697792099992822009Island text1.6897828.838927.435NeighboursBLASTNIslandViewer 977920.gbk
71004816*102833123516Island text1.5721226.641540.8637Neighbours11BLASTN+1004816.gbk
81446500146526018761Island text1.6463525.553333.0735Neighbours11BLASTN+1446500.gbk
91950154*199074540592Island text3.0324936.996745.0864Neighbours11BLASTN+IslandViewer 1950154.gbk
102117027*216609949073Island text1.8104930.850245.5194Neighbours56BLASTN+IslandViewer 2117027.gbk
112176948220121524268Island text1.6210530.982246.2274Neighbours11BLASTN+IslandViewer 2176948.gbk
122501593*252409922507Island text1.5920726.106525.807Neighbours11BLASTN+2501593.gbk
132755429*277435218924Island text1.7612325.373944.3659Neighbours11BLASTN+IslandViewer 2755429.gbk