Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012589: Sulfolobus islandicus L.S.2.15, complete genome

NCBI: NC_012589

Host Lineage: Sulfolobus islandicus; Sulfolobus; Sulfolobaceae; Sulfolobales; Crenarchaeota; Archaea

General Information: Sulfolobus islandicus L.S.2.15 (Lassen #1) was isolated from Lassen National Park in California, USA. Hyperthermophilic acidophilic sulfur-metabolizing archeon. Sulfolobus islandicus is a thermo-acidophilic archeae commonly identified in hot, acidic sulfur springs. This organism can grow both chemoautotrophically, using sulfur or hydrogen sulfide, and heterotrophically. S. islandicus can play host to a number of plasmids and viruses which may be useful in developing tools for genetic analysis. In addition, Sulfolobus islandicus isolates from different areas in Russia, Iceland, and the United States have been shown to be genetically distinct from each other making this organism useful for comparative analysis.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
18759211192624335Island text2.2993618.154234.9129Neighbours21BLASTN87592.gbk
226070328118020478Island text2.5703519.900335.0256Neighbours21BLASTN260703.gbk
334702037111724098Island text1.8709219.333736.527Neighbours21BLASTN347020.gbk
456434358459920257Island text1.7464219.807933.4876Neighbours21BLASTN+IslandViewer 564343.gbk
559800062009922100Island text1.6967819.911227.0557Neighbours21BLASTN+598000.gbk
663350065518821689Island text1.7224321.304335.2167NeighboursBLASTN+633500.gbk
778370480170718004Island text1.5884418.467329.7357NeighboursBLASTN783704.gbk
884227086155419285Island text1.5510619.487726.2029Neighbours21BLASTN842270.gbk
996749599127423780Island text1.8717521.307430.9404Neighbours21BLASTN+IslandViewer 967495.gbk
101241782126159919818Island text2.4073318.468834.045Neighbours21BLASTN+1241782.gbk
111395151*142919734047Island text2.4931919.507636.217Neighbours21BLASTN1395151.gbk
121434707*146059925893Island text2.0495723.937131.2813Neighbours21BLASTN+1434707.gbk
131482075*150143019356Island text2.4942818.047834.8398Neighbours21BLASTN1482075.gbk
141502390*152151819129Island text2.6060118.421732.2756Neighbours21BLASTN1502390.gbk
151531725*155492323199Island text2.3633221.254938.0436Neighbours21BLASTN+1531725.gbk
161684948*170364918702Island text1.4867719.546417.1093Neighbours21BLASTNIslandViewer 1684948.gbk
171723897*174341019514Island text3.1295318.350829.7813Neighbours21BLASTN1723897.gbk
181837985*185877020786Island text2.4462518.632536.0519Neighbours21BLASTNIslandViewer 1837985.gbk
191917421*196181444394Island text2.6484819.729233.4243Neighbours21BLASTN+1917421.gbk
202006323*202771621394Island text2.3095419.380834.443Neighbours21BLASTN+2006323.gbk
212275276230159826323Island text1.5547920.203131.2706Neighbours21BLASTN+2275276.gbk
222303096232654823453Island text1.9564419.698436.0945Neighbours21+2303096.gbk
232351811237465122841Island text1.3619120.865830.1194Neighbours21BLASTN+2351811.gbk
242379709240357723869Island text2.1677920.279134.919Neighbours21BLASTN2379709.gbk
252426242244736521124Island text1.9395919.725832.3382Neighbours21BLASTN+2426242.gbk
262457385*247673219348Island text1.5096620.215218.5163NeighboursBLASTN2457385.gbk
272605085262628421200Island text2.1765920.406733.6034Neighbours21BLASTN+2605085.gbk
282698556271909920544Island text1.6752119.423134.4165Neighbours21BLASTN2698556.gbk