Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012559: Laribacter hongkongensis HLHK9, complete genome

NCBI: NC_012559

Host Lineage: Laribacter hongkongensis; Laribacter; Chromobacteriaceae; Neisseriales; Proteobacteria; Bacteria

General Information: Laribacter hongkongensis HLHK9 was isolated from a case of gastroenteritis in Hong Kong. Laribacter hongkongensis is a beta-proteobacterium associated with gastroenteritis and found in freshwater fish.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
173185975630324445Island text1.9985831.55539.0024Neighbours11BLASTN+IslandViewer 731859.gbk
276893979733928401Island text2.5911936.78625.367Neighbours11BLASTN+IslandViewer 768939.gbk
385450789459940093Island text2.1451430.484425.9386Neighbours11BLASTN+IslandViewer 854507.gbk
4978419*100401325595Island text2.0336429.117232.3961Neighbours11BLASTN+978419.gbk
51064821109367428854Island text3.257845.262431.3249Neighbours11BLASTN+IslandViewer 1064821.gbk
61228280*127461346334Island text2.2058833.556926.6153Neighbours11BLASTN+IslandViewer 1228280.gbk
71301988132559923612Island text2.0888832.32126.1715Neighbours11BLASTN+IslandViewer 1301988.gbk
81497548152859931052Island text2.7044932.838826.6108Neighbours11BLASTN+IslandViewer 1497548.gbk
91635922165638420463Island text1.5312229.134218.0046Neighbours11BLASTN+IslandViewer 1635922.gbk
101663214*168255819345Island text1.6794926.209924.1442Neighbours11BLASTN+IslandViewer 1663214.gbk
111685812170879922988Island text2.1091926.29534.9373Neighbours11BLASTN+IslandViewer 1685812.gbk
121888000191471626717Island text2.055528.169325.2962Neighbours11BLASTN+IslandViewer 1888000.gbk
132309566233407924514Island text2.4196329.554647.3275Neighbours11BLASTN2309566.gbk
142353236237609922864Island text1.9268928.118236.1608Neighbours11BLASTN+IslandViewer 2353236.gbk
152563922258927225351Island text3.3407742.475545.4585Neighbours11BLASTN+IslandViewer 2563922.gbk
162663747*271401150265Island text3.2014837.014739.3053Neighbours11BLASTN+IslandViewer 2663747.gbk
172752825*277274819924Island text2.2724725.76338.7502Neighbours11BLASTN2752825.gbk
182854640*288043025791Island text2.2320734.563943.377Neighbours11BLASTNIslandViewer 2854640.gbk