Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012526: Deinococcus deserti VCD115, complete genome

NCBI: NC_012526

Host Lineage: Deinococcus deserti; Deinococcus; Deinococcaceae; Deinococcales; Deinococcus-Thermus; Bacteria

General Information: Deinococcus deserti VCD115 was isolated from gamma-irradiated Sahara desert sand. Deinococcus deserti is resistant to gamma radiation, UV radiation, and desiccation due to a very efficient DNA repair mechanism.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
14462*2702622565Island text1.7865522.733624.7975Neighbours11BLASTN+4462.gbk
2131000*14992418925Island text1.5944521.400818.2026Neighbours11BLASTN131000.gbk
3157000*17910522106Island text1.5902921.98926.7313Neighbours11BLASTN+157000.gbk
4300126*32859928474Island text1.7102124.17818.429Neighbours11BLASTN+IslandViewer 300126.gbk
5520947*54539024444Island text2.1122623.914426.7154Neighbours11BLASTN520947.gbk
676500079834433345Island text1.9663326.118539.4931Neighbours11BLASTN+IslandViewer 765000.gbk
71345597*136954123945Island text1.8482825.38321.4543Neighbours11BLASTN+1345597.gbk
81502975152418521211Island text1.661221.987919.8502Neighbours11BLASTN1502975.gbk
91576775*160272925955Island text1.7884923.845422.59Neighbours11BLASTN+IslandViewer 1576775.gbk
102155947218632930383Island text4.4093641.074232.2191Neighbours11BLASTN+IslandViewer 2155947.gbk
112317862*233754219681Island text1.8002421.208336.0763Neighbours11BLASTN2317862.gbk
122431388245171520328Island text1.7855620.618525.4842Neighbours11BLASTNIslandViewer 2431388.gbk
132483000*250920026201Island text2.0594924.140927.5964Neighbours11BLASTN2483000.gbk