Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012522: Rhodococcus opacus B4, complete genome

NCBI: NC_012522

Host Lineage: Rhodococcus opacus; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Strain B4 was isolated from a soil sample taken from the roadside in Hiroshima, Japan. It is a benzene-tolerant, Gram-postitive, non-motile, strictly aerobic rod, able to use many organic compound as its sole source of carbon and energy. Rhodococcus opacus is an aerobic, Gram-positive bacterium that can accumulate triacylglycerols (TAGs).



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
19856712209923533Island text1.5678615.868215.1358Neighbours11BLASTNIslandViewer 98567.gbk
22031786*206157229787Island text1.6169814.93824.3696Neighbours11BLASTN2031786.gbk
32623172264298019809Island text1.5886714.781916.826Neighbours11BLASTN2623172.gbk
42931910295065518746Island text1.4827815.071712.334Neighbours11BLASTN+IslandViewer 2931910.gbk
53038890305659917710Island text1.6468314.339116.1286Neighbours11BLASTN+IslandViewer 3038890.gbk
63224526325956035035Island text1.5661214.751518.4915Neighbours11BLASTNIslandViewer 3224526.gbk
73867167*389736130195Island text1.621416.452812.6688Neighbours11BLASTN+IslandViewer 3867167.gbk
84299287*434520345917Island text1.5424120.559629.6609Neighbours11BLASTN+IslandViewer 4299287.gbk
94692260471230420045Island text1.6135618.306214.3212Neighbours11BLASTN+4692260.gbk
105847699587179324095Island text1.4552915.588522.1586Neighbours11BLASTNIslandViewer 5847699.gbk
115895946592393127986Island text1.9113619.779323.7041Neighbours11BLASTN+IslandViewer 5895946.gbk
125952307*597971027404Island text1.7269817.096325.3888Neighbours11BLASTNIslandViewer 5952307.gbk
135987644601286925226Island text3.0269823.046824.4273Neighbours11BLASTN+IslandViewer 5987644.gbk
147596039763616240124Island text4.608345.172740.4973Neighbours11BLASTN+IslandViewer 7596039.gbk
157763426778680123376Island text1.4534315.716214.9226Neighbours11BLASTN+7763426.gbk
167837071785964122571Island text1.6400214.88539.81246Neighbours11BLASTN+7837071.gbk
177871173789754126369Island text1.9380619.56819.8629Neighbours11BLASTN+7871173.gbk