Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012491: Brevibacillus brevis NBRC 100599, complete genome

NCBI: NC_012491

Host Lineage: Brevibacillus brevis; Brevibacillus; Paenibacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Strictly aerobic, Gram-positive, spore-forming soil bacterium. When faced with nutritional stress, this species develops genetic competance and motility, sporulates, and produces antibiotics during the transition between the exponential and stationary phases. The genes involved in antibiotic production have been well characterized and have led to the commercial production of tyrocidine and gramicidin.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
164875667089222137Island text1.5330137.066833.7666Neighbours363+648756.gbk
2743883*78009936217Island text2.3073635.572520.0122Neighbours21BLASTN+IslandViewer 743883.gbk
31187864*121218424321Island text1.7832528.638728.8038Neighbours21BLASTN+1187864.gbk
41263469128469621228Island text1.5338735.470640.2643Neighbours37BLASTN1263469.gbk
51293086132427131186Island text3.1467937.018543.9299Neighbours21BLASTN+1293086.gbk
61838432186965331222Island text1.7028536.161645.7535Neighbours3631838432.gbk
73088500310609917600Island text1.5447732.943252.9175Neighbours3633088500.gbk
83115518314759932082Island text2.8610933.057220.977Neighbours363BLASTN+3115518.gbk
93704000372630522306Island text1.7016633.292825.2406Neighbours213704000.gbk
103736167377562939463Island text2.2031533.443336.8594Neighbours21BLASTN+IslandViewer 3736167.gbk
114231469*425472523257Island text2.227233.043523.523Neighbours21BLASTN4231469.gbk
124692667471920026534Island text2.585838.427239.2884Neighbours363BLASTN4692667.gbk
134987280*501077323494Island text2.0693933.84314.3927Neighbours21BLASTN+4987280.gbk
145628000565078022781Island text4.055633.617330.7566Neighbours21BLASTN+5628000.gbk
155914500*593863824139Island text2.2857435.658330.8442Neighbours21BLASTN5914500.gbk
166143928616647422547Island text1.5119334.855338.9633Neighbours37BLASTN+6143928.gbk