Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012489: Gemmatimonas aurantiaca T-27, complete genome

NCBI: NC_012489

Host Lineage: Gemmatimonas aurantiaca; Gemmatimonas; Gemmatimonadaceae; Gemmatimonadales; Gemmatimonadetes; Bacteria

General Information: Gram-negative, rod-shaped aerobe. Polyphosphate accumulating bacterium. This species was isolated from an anaerobic-aerobic sequential batch reactor operated under enhanced biological phosphorus removal conditions for wastewater treatment. The isolation strategy used targeted slowly growing polyphosphate-accumulating bacteria by combining low-speed centrifugations and prolonged incubation on a low-nutrient medium. This is the first isolated species in the Gemmatimonadetes phylum.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
120901623761528600Island text1.6533327.052623.2425Neighbours11BLASTNIslandViewer 209016.gbk
265231969038838070Island text1.9380224.644927.6922Neighbours11BLASTNIslandViewer 652319.gbk
31797032*181538418353Island text1.4947325.717424.0346Neighbours11BLASTN+IslandViewer 1797032.gbk
41874415*190141126997Island text2.2110926.4633.9679Neighbours11BLASTN1874415.gbk
52913920293688022961Island text1.7117625.962422.6258Neighbours11BLASTNIslandViewer 2913920.gbk
63425416344818922774Island text1.3657521.710819.9781Neighbours11BLASTN3425416.gbk
73503632352639622765Island text1.4544625.115523.6448Neighbours11BLASTNIslandViewer 3503632.gbk
84336790*438246945680Island text1.5775421.307119.6338Neighbours11BLASTN+IslandViewer 4336790.gbk