Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_012471: Streptococcus equi subsp. equi 4047, complete genome

NCBI: NC_012471

Host Lineage: Streptococcus equi; Streptococcus; Streptococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Streptococcus equi equi is an obligate parasitic bacterium and is the causative agent of a serious upper respiratory tract disease within members of the family Equidae (horses), called strangles. Strangles is a highly contagious disease of the nasopharynx and lymph nodes. The genome sequence of this organism will provide information into the production and regulation of virulence factors involved in this disease. Pathogenic in horses, goats and sheep. Streptococci are Gram-positive, nonmotile, nonsporeforming, catalase-negative cocci that occur in pairs or chains. Members of this genus vary widely in pathogenic potential. Most streptococci are facultative anaerobes, and some are obligate anaerobes.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
151305*7507523771Island text2.0077628.645826.2788Neighbours21BLASTN+51305.gbk
214146316526123799Island text1.6950828.759738.049Neighbours21BLASTN+IslandViewer 141463.gbk
3719000*75122032221Island text2.0888828.016234.202Neighbours21BLASTN+IslandViewer 719000.gbk
478106381683235770Island text1.6169427.719440.8575Neighbours21BLASTN+IslandViewer 781063.gbk
51197534*127953582002Island text3.9730732.647224.9193Neighbours21BLASTN+IslandViewer 1197534.gbk
61752483177105218570Island text1.6226326.915134.3891Neighbours21BLASTN+1752483.gbk
72058592208007021479Island text1.864226.434823.4803Neighbours21BLASTN+2058592.gbk
82080902210553324632Island text1.8125127.53537.4846Neighbours21BLASTN+IslandViewer 2080902.gbk