Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_012470: Streptococcus equi subsp. zooepidemicus, complete genome

NCBI: NC_012470

Host Lineage: Streptococcus equi; Streptococcus; Streptococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This bacterium is part of the normal bacterial flora in horses, however, it has also been isolated from a number of other mammals including humans. S. equi subsp. zooepidemicus is the cause of Inflammatory Airway Disease (IAD) in horses. This organism is also an opportunistic pathogen which can cause infections in the upper respiratory tract, uterus, umbilicus and in open wounds. Pathogenic in horses, goats and sheep. Streptococci are Gram-positive, nonmotile, nonsporeforming, catalase-negative cocci that occur in pairs or chains. Members of this genus vary widely in pathogenic potential. Most streptococci are facultative anaerobes, and some are obligate anaerobes.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1258287*27791519629Island text1.8376327.302213.8293Neighbours21BLASTN+IslandViewer 258287.gbk
258037360677726405Island text4.1702831.988222.6597Neighbours21BLASTN+IslandViewer 580373.gbk
367866169847319813Island text2.0407726.804219.2573Neighbours21BLASTN+678661.gbk
4853561*88426730707Island text3.3106131.613418.4118Neighbours21BLASTN+IslandViewer 853561.gbk
51061392108034918958Island text2.0923126.617220.039Neighbours21BLASTN+1061392.gbk
61370418138977819361Island text1.7923826.103527.5978Neighbours21BLASTN+1370418.gbk
71390285143409443810Island text2.6362330.038925.672Neighbours21BLASTN+IslandViewer 1390285.gbk
81606000162784321844Island text1.9543326.39230.3326Neighbours21BLASTNIslandViewer 1606000.gbk
91635516*166088925374Island text1.7719426.243322.5362Neighbours21BLASTN+1635516.gbk
101946968197611629149Island text1.8882929.17717.1828Neighbours21BLASTN+IslandViewer 1946968.gbk
112021316*204432623011Island text1.750127.222228.8647Neighbours21BLASTN+2021316.gbk