n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)
n0_4mer:D = Distance between local and global OU patterns
n0_4mer:PS = Distance between 2 strands of same DNA molecule
Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS
NC_012470: Streptococcus equi subsp. zooepidemicus, complete genome NCBI: NC_012470 Host Lineage: Streptococcus equi; Streptococcus; Streptococcaceae; Lactobacillales; Firmicutes; Bacteria General Information: This bacterium is part of the normal bacterial flora in horses, however, it has also been isolated from a number of other mammals including humans. S. equi subsp. zooepidemicus is the cause of Inflammatory Airway Disease (IAD) in horses. This organism is also an opportunistic pathogen which can cause infections in the upper respiratory tract, uterus, umbilicus and in open wounds. Pathogenic in horses, goats and sheep. Streptococci are Gram-positive, nonmotile, nonsporeforming, catalase-negative cocci that occur in pairs or chains. Members of this genus vary widely in pathogenic potential. Most streptococci are facultative anaerobes, and some are obligate anaerobes.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!