Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012440: Persephonella marina EX-H1, complete genome

NCBI: NC_012440

Host Lineage: Persephonella marina; Persephonella; Hydrogenothermaceae; Aquificales; Aquificae; Bacteria

General Information: This species is a chemolithotrophic, thermophilic hydrogen-oxidizing bacterium. This strain was collected from a deep sea hydrothermal vent on the East Pacific Rise.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1197728*22123323506Island text1.8181418.242337.4832Neighbours21BLASTN+197728.gbk
2373863*39716723305Island text1.5456620.330733.5607Neighbours21BLASTN+373863.gbk
3423217*44882425608Island text2.5688823.019719.8652Neighbours21BLASTN423217.gbk
4585568*61010524538Island text1.3662920.434134.2794Neighbours21BLASTN+585568.gbk
5609659*63380724149Island text1.4714923.47433.8287Neighbours21BLASTN609659.gbk
6659646*69768738042Island text1.6357719.878737.4775Neighbours21BLASTN659646.gbk
71080675*110855327879Island text3.0938434.591640.2546Neighbours21BLASTN1080675.gbk
81117510*114123723728Island text1.5436122.18134.4403Neighbours21BLASTN1117510.gbk
91215838*124846532628Island text3.1812924.268624.4194Neighbours21BLASTN+IslandViewer 1215838.gbk
101249941127185421914Island text1.9750422.121821.6389Neighbours21BLASTN1249941.gbk
111405879*143058524707Island text1.5125620.367235.4184Neighbours21BLASTN+1405879.gbk
121709416*175187842463Island text1.7730121.415628.6164Neighbours21+IslandViewer 1709416.gbk
131841315*186760426290Island text3.0373135.228838.1512Neighbours323BLASTN1841315.gbk
141874896*189339018495Island text1.5647218.938535.2784Neighbours21BLASTN+1874896.gbk