Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_012440: Persephonella marina EX-H1, complete genome

NCBI: NC_012440

Host Lineage: Persephonella marina; Persephonella; Hydrogenothermaceae; Aquificales; Aquificae; Bacteria

General Information: This species is a chemolithotrophic, thermophilic hydrogen-oxidizing bacterium. This strain was collected from a deep sea hydrothermal vent on the East Pacific Rise.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1197728*22123323506Island text1.8181418.242337.4832Neighbours21BLASTN+197728.gbk
2373863*39716723305Island text1.5456620.330733.5607Neighbours21BLASTN+373863.gbk
3423217*44882425608Island text2.5688823.019719.8652Neighbours21BLASTN423217.gbk
4585568*61010524538Island text1.36629