Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012438: Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genome

NCBI: NC_012438

Host Lineage: Sulfurihydrogenibium azorense; Sulfurihydrogenibium; Hydrogenothermaceae; Aquificales; Aquificae; Bacteria

General Information: This strain was isolated from a terrestrial hot spring in the Azores, where it was living at temperatures between 65 degrees C and 70 degrees C. Hydrogen-oxidizing thermophile. Sulfurihydrogenibium azorense is a thermophilic bacterium that is able to use hydrogen and sulfur compounds as electron donors. This organism is also able to use ferric iron and arsenate as electron acceptors. This is the first pure culture terrestrial member of the Aquificales group, isolated by dilution-to-extinction methods.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
150845*7445023606Island text1.8240617.573636.1189Neighbours323BLASTN+50845.gbk
2132456*15253620081Island text2.0474118.648236.7645Neighbours323BLASTN+132456.gbk
3159927*18278222856Island text2.6345318.458234.2734Neighbours323BLASTN159927.gbk
4192065*21422922165Island text2.192119.320335.1276Neighbours323BLASTN192065.gbk
556541958839222974Island text1.7960521.370433.5644Neighbours323BLASTN565419.gbk
677626079624619987Island text2.3146117.673923.0113Neighbours21BLASTN776260.gbk
7818387*84539527009Island text2.7973730.400334.6327Neighbours323BLASTN+IslandViewer 818387.gbk
81211940124172429785Island text1.7529420.088628.7993Neighbours323BLASTN1211940.gbk
91301960132593923980Island text1.7432720.171127.1969Neighbours323BLASTN1301960.gbk
101514376*153933624961Island text2.9380931.513734.6636Neighbours323BLASTN1514376.gbk
111564794*158318718394Island text1.8896117.816833.9384Neighbours323BLASTN1564794.gbk
121600534*164499944466Island text2.480619.739835.1334Neighbours21BLASTN+1600534.gbk