Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012214: Erwinia pyrifoliae Ep1/96, complete genome

NCBI: NC_012214

Host Lineage: Erwinia pyrifoliae; Erwinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Erwinia pyrifoliae is a pathogen of Asian pears. Isolated in Korea. Plant pathogen.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112580225802Island text1.934941.47735.7856Neighbours41BLASTN+IslandViewer 1.gbk
212433714380319467Island text1.5042731.298626.5501Neighbours41BLASTN+124337.gbk
3474359*49790923551Island text1.7060332.75523.9615Neighbours41BLASTN+IslandViewer 474359.gbk
453700055834721348Island text2.3479535.476121.3995Neighbours41BLASTN+IslandViewer 537000.gbk
5594667*61855023884Island text1.8020928.517129.2727Neighbours41BLASTN594667.gbk
674530276695921658Island text1.9342235.144123.8509Neighbours41BLASTN+IslandViewer 745302.gbk
789720692299825793Island text2.1633236.814228.6296Neighbours41BLASTN+IslandViewer 897206.gbk
81117325*114343626112Island text2.4015738.192726.9582Neighbours41BLASTN+IslandViewer 1117325.gbk
91212616123625023635Island text1.8396136.770928.0656Neighbours41BLASTN+IslandViewer 1212616.gbk
101267589*129886031272Island text1.5486929.838722.9474Neighbours11BLASTN+1267589.gbk
111355500137677021271Island text1.5467834.913829.4152Neighbours41BLASTN+IslandViewer 1355500.gbk
121438476146005421579Island text1.6624633.148621.2067Neighbours41BLASTNIslandViewer 1438476.gbk
131588573162042231850Island text1.7220431.344533.6723Neighbours41BLASTN+1588573.gbk
141650523*168104730525Island text3.995742.597121.7929Neighbours41BLASTN+IslandViewer 1650523.gbk
151974500201677342274Island text1.6766531.037428.4197Neighbours41BLASTN+IslandViewer 1974500.gbk
162019000204685227853Island text1.7387832.047829.0447Neighbours41BLASTN+IslandViewer 2019000.gbk
172221702*227363551934Island text4.3666946.301622.8243Neighbours41BLASTN+IslandViewer 2221702.gbk
182673058*270161428557Island text4.4790947.723124.9565Neighbours41BLASTN+IslandViewer 2673058.gbk
192805297*283239127095Island text2.0047334.74419.7953Neighbours41BLASTN+IslandViewer 2805297.gbk
203303955332359919645Island text1.5730631.403734.5003Neighbours41BLASTN+IslandViewer 3303955.gbk
213502992352409021099Island text1.6111930.964321.8805Neighbours41BLASTN+IslandViewer 3502992.gbk
223750649377787527227Island text2.9656339.772629.8479Neighbours41BLASTN+IslandViewer 3750649.gbk
233931824*395459922776Island text1.9787131.233718.2794Neighbours41BLASTN+IslandViewer 3931824.gbk