Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012121: Staphylococcus carnosus subsp. carnosus TM300, complete genome

NCBI: NC_012121

Host Lineage: Staphylococcus carnosus; Staphylococcus; Staphylococcaceae; Bacillales; Firmicutes; Bacteria

General Information: This is a Gram positive, nonmotile, nonsporeforming bacterium isolated from dry sausages. Staphylococcus carnosus subsp. carnosus TM300 is used as a meat starter culture and classified as GRAS (generally recognized as safe) organism.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111391213959925688Island text4.4597427.866346.0674Neighbours21BLASTN+113912.gbk
2139741*18060640866Island text1.6133419.567430.2115Neighbours21BLASTN+139741.gbk
3198480*21690218423Island text1.5741320.185630.6568Neighbours21BLASTN198480.gbk
447414450609331950Island text2.5539622.655541.9828Neighbours21BLASTN+IslandViewer 474144.gbk
5837586*85955321968Island text1.5943918.535334.1759Neighbours21BLASTN837586.gbk
6897866*92042622561Island text1.5344118.014329.626Neighbours21BLASTN897866.gbk
71444633*146884124209Island text4.063237.300546.9468Neighbours21BLASTN+1444633.gbk
81578190160311524926Island text3.2490324.476435.1151Neighbours21BLASTN1578190.gbk
91676367*170109924733Island text3.9055127.059539.7783Neighbours21BLASTN1676367.gbk
101728913*174659917687Island text1.4830220.762430.0158Neighbours21BLASTN1728913.gbk
111894148191338819241Island text1.5433819.579934.0236Neighbours21BLASTN1894148.gbk
122218500223824019741Island text1.5288525.244741.6342Neighbours325BLASTN+2218500.gbk