Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_012115: Nautilia profundicola AmH, complete genome

NCBI: NC_012115

Host Lineage: Nautilia profundicola; Nautilia; Nautiliaceae; Nautiliales; Proteobacteria; Bacteria

General Information: Thermophilic sulfur-reducing bacterium. Nautilia can be isolated from the epidermis of the hydrothermal vent worm, Alvinella pompejana and from hydrothermal vent chimneys. These organisms grow chemoautotrophically on hydrogen, sulfur, and CO2. Nautilia profundicola is a thermophilic, hydrogen-oxidizing, sulfur-reducing chemoautotroph that uses the reductive TCA cycle for carbon fixation. It is a member of the deepest branch of the Epsilonproteobacteria and is a model organism of the anaerobic autotrophic Epsilonproteobacteria at hydrothermal vents.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1691154*71677025617Island text1.7124522.902544.6766Neighbours21BLASTN+691154.gbk
2961883*98493323051Island text1.8388528.931944.5086Neighbours21BLASTN961883.gbk
31122905*114753124627Island text1.812227.94440.382Neighbours21BLASTN1122905.gbk
41415827*144010724281Island text1.6880621.066432.0624Neighbours21BLASTN1415827.gbk