Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012108: Desulfobacterium autotrophicum HRM2, complete genome

NCBI: NC_012108

Host Lineage: Desulfobacterium autotrophicum; Desulfobacterium; Desulfobacteraceae; Desulfobacterales; Proteobacteria; Bacteria

General Information: It was isolated from a marine sediment in the Mediterranean sea near Venice, Italy. It is involved in the anaerobic mineralization of organic matter coming from the water column. Desulfobacterium autotrophicum is capable of growing litho-autotrophically with H2, CO2 and sulfate, but also by coupling sulfate reduction with the oxidation of fatty acids. This organism can transform tetra to dichlormethane.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1442493*46990827416Island text1.8593234.726418.5361Neighbours23BLASTN442493.gbk
248165750170620050Island text1.549729.833421.9378Neighbours32BLASTN+481657.gbk
361608864062524538Island text1.6476232.975422.2847Neighbours32BLASTN616088.gbk
472100574071819714Island text1.5431629.626727.8399Neighbours23BLASTN+IslandViewer 721005.gbk
590426092864924390Island text1.7053534.210820.2669Neighbours23BLASTN+904260.gbk
694631496873322420Island text1.5933629.512120.5532Neighbours32BLASTN+946314.gbk
71067876*109927731402Island text1.6202632.756932.8003Neighbours32BLASTN+IslandViewer 1067876.gbk
81324885134954324659Island text1.9663535.929616.9921NeighboursBLASTNIslandViewer 1324885.gbk
91664341168739323053Island text1.5612830.476426.2928Neighbours23BLASTN1664341.gbk
101694817171809923283Island text1.5323931.510829.5152Neighbours23BLASTN+1694817.gbk
111973861199709923239Island text1.5831933.013120.041Neighbours32BLASTN+1973861.gbk
122037429*205782120393Island text1.6069933.53621.0729Neighbours32BLASTNIslandViewer 2037429.gbk
132065355208530819954Island text1.5735929.945918.6028Neighbours32BLASTN2065355.gbk
142159230*218421024981Island text1.6430134.478822.9252Neighbours32BLASTN+IslandViewer 2159230.gbk
152194251221910124851Island text1.8073733.311924.454Neighbours32BLASTN2194251.gbk
162220983*227171250730Island text1.7636432.333222.0108Neighbours21BLASTN+2220983.gbk
172305327234281637490Island text1.6528131.849625.7499Neighbours21BLASTN+IslandViewer 2305327.gbk
182542328*256525022923Island text1.6241131.784246.3298Neighbours32BLASTN+2542328.gbk
192874831291968644856Island text2.2296836.715718.5403Neighbours21BLASTN+IslandViewer 2874831.gbk
202975676299659920924Island text1.5768530.226627.1064Neighbours32BLASTN+IslandViewer 2975676.gbk
213391190341780826619Island text2.0330733.174923.3947NeighboursBLASTN+3391190.gbk
223824977384905524079Island text1.3921331.973518.2909Neighbours32BLASTN+3824977.gbk
233878500390384625347Island text1.5554330.050118.8021Neighbours32BLASTN+3878500.gbk
243922511*394709524585Island text1.5231130.234815.2001NeighboursBLASTN+IslandViewer 3922511.gbk
253965433*398469319261Island text1.4965930.745448.9828Neighbours32BLASTN3965433.gbk
264118888414861129724Island text2.3347735.868520.3987Neighbours23BLASTN+IslandViewer 4118888.gbk
274387331*441221424884Island text1.4108229.255822.9748Neighbours32BLASTN+4387331.gbk
284417483444609928617Island text1.7397530.375816.8359Neighbours32BLASTN+IslandViewer 4417483.gbk
294454705448199527291Island text2.1897435.875420.7638Neighbours32BLASTN+IslandViewer 4454705.gbk
304907430493001222583Island text1.5848831.37722.7298Neighbours23BLASTN+4907430.gbk
314937000495758520586Island text1.5176429.655630.1361Neighbours32BLASTN+4937000.gbk
324971086502487253787Island text1.5229431.509217.6044Neighbours23BLASTN+IslandViewer 4971086.gbk
335273289*529426720979Island text1.5182131.478151.5357NeighboursBLASTN5273289.gbk