Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_012039: Campylobacter lari RM2100, complete genome

NCBI: NC_012039

Host Lineage: Campylobacter lari; Campylobacter; Campylobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: Causes gastrointestinal disease. This organism is closely related to C. jejuni and C. coli and is a foodborne pathogen that causes gastroenteritis and diarrhea. In addition this organism can cause bacteremia and septicemia in immunocompromised individuals. The bacterium is found in a variety of habitats including water environments, and seagulls are considered a reservoir for the organism. Shellfish can harbor the organism when inhabiting water contaminated by seagulls carrying the organism.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
153497*7203018534Island text1.688614.041227.8779Neighbours21BLASTN+53497.gbk
2185607*20855122945Island text1.4348415.308928.7124Neighbours21BLASTN185607.gbk
3257962*28248324522Island text1.5163814.154525.3868Neighbours21BLASTN+257962.gbk
4412837*45648543649Island text2.0792716.920629.7293Neighbours21BLASTN+412837.gbk
5480625*50506324439Island text2.4957919.353431.2423Neighbours21BLASTN480625.gbk
61365576*139129025715Island text1.6686516.603833.0856Neighbours21BLASTN+1365576.gbk
71399699*142559925901Island text2.0412419.459836.2252Neighbours21BLASTN1399699.gbk