Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012034: Anaerocellum thermophilum DSM 6725, complete genome

NCBI: NC_012034

Host Lineage: Caldicellulosiruptor bescii; Caldicellulosiruptor; Thermoanaerobacterales Family III; Thermoanaerobacterales; Firmicutes; Bacteria

General Information: Anaerocellum thermophilum was isolated from a hot spring on the Kamchatka peninsula in Russia. This organism produces thermostable enzymes which can degrade cellulose and starches and may be of use in industry.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
164693509928631Island text2.7652127.38347.154Neighbours21BLASTN6469.gbk
239027342011629844Island text3.3191727.342445.7443Neighbours21BLASTN390273.gbk
3438000*46097122972Island text2.6154531.037348.0312Neighbours21BLASTN+438000.gbk
4802453*82393021478Island text2.3082524.600532.9628Neighbours21BLASTNIslandViewer 802453.gbk
5893000*91271619717Island text2.0467724.335340.7541Neighbours21BLASTN893000.gbk
61049454*107295623503Island text1.9128523.145742.3559Neighbours21BLASTN+1049454.gbk
71783912*182367039759Island text2.4156528.785345.7788Neighbours21BLASTN+1783912.gbk
81925983197809952117Island text1.9296328.372446.1125Neighbours21BLASTN+IslandViewer 1925983.gbk
92107546212614618601Island text1.8359723.613831.77Neighbours21BLASTN+2107546.gbk
102555447*258759932153Island text2.0633227.037635.5542Neighbours21BLASTN+2555447.gbk
112623252*264403920788Island text1.9125325.123830.9689Neighbours21BLASTN+IslandViewer 2623252.gbk
122676943*271390936967Island text2.9166126.446847.3187Neighbours21BLASTN2676943.gbk